Publications

DiMaggio, P. A.; McAllister, S. R.; Floudas, C. A.; Feng, X. J.; Rabinowitz, J. D.; Rabitz, H. A. Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies. BMC Bioinformatics 2008, 9, 458.
DOI: 10.1186/1471-2105-9-458 | Import citation into BibTeX, EndNote

McAllister, S. R.; DiMaggio, P. A.; Floudas, C. A.; Feng, X. J.; Rabinowitz, J. D.; Rabitz, H. A. Descriptor-free molecular discovery in large libaries by adaptive substituent reordering. Bioorg. Med. Chem. Lett. 2008, 18 (22), 5967-5970.
DOI: 10.1016/j.bmcl.2008.09.068

DiMaggio, P. A.; McAllister, S. R.; Floudas, C. A.; Feng, X. J.; Rabinowitz, J. D.; Rabitz, H. A. Optimal Methods for Re-ordering Data Matrices in Systems Biology and Drug Discovery Applications. Biophys. Rev. Lett. 2008, 3 (1-2), 19-42.
DOI: 10.1142/S1793048008000605 | Import citation into BibTeX

McAllister, S. R.; DiMaggio, P. A.; Floudas, C. A. Mathematical modeling and efficient optimization methods for the distance-dependent rearrangement clustering problem. J. Global Optim. 2009, 45, 111-129.
DOI: 10.1007/s10898-008-9393-8

DiMaggio, P. A.; McAllister, S. R.; Floudas, C. A.; Feng, X. J.; Rabinowitz, J. D.; Rabitz, H. A. A network flow model for biclustering via optimal re-ordering of data matrices. J. Global Optim. 2010, 47 (3), 343-354.
DOI: 10.1007/s10898-008-9349-z | Import citation into BibTeX

DiMaggio, P. A.; McAllister, S. R.; Floudas, C. A.; Feng, X. J.; Li, G.; Rabinowitz, J. D.; Rabitz, H. A. Enhancing molecular discovery using descriptor-free rearrangement clustering techniques for sparse data sets. AIChE J. 2010, 56 (2), 405-418.
DOI: 10.1002/aic.11986 | Import citation into BibTeX, EndNote

DiMaggio, P. A.; Subramani, A.; Judson, R. S.; Floudas, C. A. A Novel Framework for Predicting in vivo Toxicities from in vitro Data using Optimal Methods for Dense and Sparse Matrix Re-ordering and Logistic Regression. Toxicol. Sci. 2010, 118 (1), 251-265.
DOI: 10.1093/toxsci/kfq233